sphingomonas sp atcc 55669 Search Results


atcc 55669  (ATCC)
94
ATCC atcc 55669
Atcc 55669, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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sphingomonas sp  (ATCC)
94
ATCC sphingomonas sp
Proposed astaxanthin biosynthetic pathway in <t>Sphingomonas</t> sp. ATCC 55669. ( A ) In the strain Sphingomonas sp. ATCC 55669, upstream events via the MEP pathway to get the precursors IPP and DMAPP. ( B ) The downstream carotenoid pathway involved the conversion of intermediates IPP and DMAPP to astaxanthin. DXS, 1‐deoxy‐D‐xylulose‐5‐phosphate synthase; DXR, 1‐deoxy‐D‐xylulose‐5‐phosphate reductoisomerase; IspD, 2‐ C ‐methyl‐D‐erythritol 4‐phosphate cytidylyltransferase; IspE, 4‐diphosphocytidyl‐2‐ C ‐methyl‐D‐erythritol kinase; IspF, 2‐ C ‐methyl‐D‐erythritol 2,4‐cyclodiphosphate synthase; IspG, (E)‐4‐hydroxy‐3‐methylbut‐2‐enyl‐diphosphate synthase; IspH, 4‐hydroxy‐3‐methylbut‐2‐enyl diphosphate reductase. G‐3‐P,D‐glyceraldehyde 3‐phosphate; DXP, 1‐deoxy‐D‐xylulose 5‐phosphate; CDP‐ME, 4‐(cytidine 5'‐diphospho)‐2‐ C ‐methyl‐D‐erythritol; CDP‐ME2P, 2‐phospho‐4‐(cytidine 5'‐diphospho)‐2‐ C ‐methyl‐D‐erythritol; ME‐cPP, 2‐ C ‐methyl‐D‐erythritol 2,4‐cyclodiphosphate; HMBPP, 1‐hydroxy‐2‐methyl‐2‐butenyl 4‐diphosphate.
Sphingomonas Sp, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sphingomonas+sp+atcc+55669/Sphingomonas+sp/pmc05064606-119-0-2
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salmonella typhi  (ATCC)
96
ATCC salmonella typhi
Indicator Strain, and their Growth conditions
Salmonella Typhi, supplied by ATCC, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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salmonella typhi - by Bioz Stars, 2026-10
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Image Search Results


Proposed astaxanthin biosynthetic pathway in Sphingomonas sp. ATCC 55669. ( A ) In the strain Sphingomonas sp. ATCC 55669, upstream events via the MEP pathway to get the precursors IPP and DMAPP. ( B ) The downstream carotenoid pathway involved the conversion of intermediates IPP and DMAPP to astaxanthin. DXS, 1‐deoxy‐D‐xylulose‐5‐phosphate synthase; DXR, 1‐deoxy‐D‐xylulose‐5‐phosphate reductoisomerase; IspD, 2‐ C ‐methyl‐D‐erythritol 4‐phosphate cytidylyltransferase; IspE, 4‐diphosphocytidyl‐2‐ C ‐methyl‐D‐erythritol kinase; IspF, 2‐ C ‐methyl‐D‐erythritol 2,4‐cyclodiphosphate synthase; IspG, (E)‐4‐hydroxy‐3‐methylbut‐2‐enyl‐diphosphate synthase; IspH, 4‐hydroxy‐3‐methylbut‐2‐enyl diphosphate reductase. G‐3‐P,D‐glyceraldehyde 3‐phosphate; DXP, 1‐deoxy‐D‐xylulose 5‐phosphate; CDP‐ME, 4‐(cytidine 5'‐diphospho)‐2‐ C ‐methyl‐D‐erythritol; CDP‐ME2P, 2‐phospho‐4‐(cytidine 5'‐diphospho)‐2‐ C ‐methyl‐D‐erythritol; ME‐cPP, 2‐ C ‐methyl‐D‐erythritol 2,4‐cyclodiphosphate; HMBPP, 1‐hydroxy‐2‐methyl‐2‐butenyl 4‐diphosphate.

Journal: Biotechnology Journal

Article Title: Genome mining of astaxanthin biosynthetic genes from Sphingomonas sp. ATCC 55669 for heterologous overproduction in Escherichia coli

doi: 10.1002/biot.201400827

Figure Lengend Snippet: Proposed astaxanthin biosynthetic pathway in Sphingomonas sp. ATCC 55669. ( A ) In the strain Sphingomonas sp. ATCC 55669, upstream events via the MEP pathway to get the precursors IPP and DMAPP. ( B ) The downstream carotenoid pathway involved the conversion of intermediates IPP and DMAPP to astaxanthin. DXS, 1‐deoxy‐D‐xylulose‐5‐phosphate synthase; DXR, 1‐deoxy‐D‐xylulose‐5‐phosphate reductoisomerase; IspD, 2‐ C ‐methyl‐D‐erythritol 4‐phosphate cytidylyltransferase; IspE, 4‐diphosphocytidyl‐2‐ C ‐methyl‐D‐erythritol kinase; IspF, 2‐ C ‐methyl‐D‐erythritol 2,4‐cyclodiphosphate synthase; IspG, (E)‐4‐hydroxy‐3‐methylbut‐2‐enyl‐diphosphate synthase; IspH, 4‐hydroxy‐3‐methylbut‐2‐enyl diphosphate reductase. G‐3‐P,D‐glyceraldehyde 3‐phosphate; DXP, 1‐deoxy‐D‐xylulose 5‐phosphate; CDP‐ME, 4‐(cytidine 5'‐diphospho)‐2‐ C ‐methyl‐D‐erythritol; CDP‐ME2P, 2‐phospho‐4‐(cytidine 5'‐diphospho)‐2‐ C ‐methyl‐D‐erythritol; ME‐cPP, 2‐ C ‐methyl‐D‐erythritol 2,4‐cyclodiphosphate; HMBPP, 1‐hydroxy‐2‐methyl‐2‐butenyl 4‐diphosphate.

Article Snippet: Sphingomonas sp. ATCC 55669 with pBBR1MCS2 served as the negative control.

Techniques:

The complete genome of Sphingomonas sp. ATCC 55669 contained three circular DNAs: one chromosome ( A ) and two megaplasmids ( B , C ). From innermost to outermost circles: GC content; GC‐skew ([G – C] / [G + C]); methylation information of forward sequences (red, m4C; blue, 6mA); methylation information of reverse sequences (pink, m4C; cyan, 6mA); predicted genes color‐coded by COG categories of forward and reverse strands, respectively; and genes related to the non‐mevalonate pathway and carotenoid biosynthesis. All genes putatively involved in astaxanthin biosynthesis “ (gene names noted in the outer circle) showed a discrete distribution throughout the chromosome.

Journal: Biotechnology Journal

Article Title: Genome mining of astaxanthin biosynthetic genes from Sphingomonas sp. ATCC 55669 for heterologous overproduction in Escherichia coli

doi: 10.1002/biot.201400827

Figure Lengend Snippet: The complete genome of Sphingomonas sp. ATCC 55669 contained three circular DNAs: one chromosome ( A ) and two megaplasmids ( B , C ). From innermost to outermost circles: GC content; GC‐skew ([G – C] / [G + C]); methylation information of forward sequences (red, m4C; blue, 6mA); methylation information of reverse sequences (pink, m4C; cyan, 6mA); predicted genes color‐coded by COG categories of forward and reverse strands, respectively; and genes related to the non‐mevalonate pathway and carotenoid biosynthesis. All genes putatively involved in astaxanthin biosynthesis “ (gene names noted in the outer circle) showed a discrete distribution throughout the chromosome.

Article Snippet: Sphingomonas sp. ATCC 55669 with pBBR1MCS2 served as the negative control.

Techniques: Methylation

Targeted engineering E. coli for astaxanthin overproduction. ( A ) Over‐production of the intermediates IPP and DMAPP was achieved by endogenous acetyl‐CoA via the MVA pathway. AtoB (acetyl‐CoA acetyltransferase) and Idi were from E. coli . Erg13 (3‐hydroxy‐3‐methylglutaryl‐CoA synthase), tHMG1 (a truncated version of 3‐hydroxy‐3‐methylglutaryl‐CoA reductase), ERG12 (mevalonate kinase), ERG8 (phosphomevalonate kinase), and MVD1 (mevalonate pyrophosphate decarboxylase) were from Saccharomyces cerevisiae . Plasmids pMH1 and pFZ81 were controlled by the P lac promoter. ( B ) Overproduction of astaxanthin from intermediates IPP and DMAPP via the carotenoid pathway. CrtEIB was from Pantoea ananatis ; crtYZ was from Pantoea agglomerans ; crtW was from Brevundimonas sp. SD212; idi was from E. coli ; and crtEs p1 , crtE sp2 , crtE sp3 , crtZ sp1 , and crtZ sp2 were from Sphingomonas sp. ATCC 55669. Gene expression was controlled by the P T7 promoter. ( C ) Production of astaxanthin in engineered strains from A1 to A6 detected by HPLC.

Journal: Biotechnology Journal

Article Title: Genome mining of astaxanthin biosynthetic genes from Sphingomonas sp. ATCC 55669 for heterologous overproduction in Escherichia coli

doi: 10.1002/biot.201400827

Figure Lengend Snippet: Targeted engineering E. coli for astaxanthin overproduction. ( A ) Over‐production of the intermediates IPP and DMAPP was achieved by endogenous acetyl‐CoA via the MVA pathway. AtoB (acetyl‐CoA acetyltransferase) and Idi were from E. coli . Erg13 (3‐hydroxy‐3‐methylglutaryl‐CoA synthase), tHMG1 (a truncated version of 3‐hydroxy‐3‐methylglutaryl‐CoA reductase), ERG12 (mevalonate kinase), ERG8 (phosphomevalonate kinase), and MVD1 (mevalonate pyrophosphate decarboxylase) were from Saccharomyces cerevisiae . Plasmids pMH1 and pFZ81 were controlled by the P lac promoter. ( B ) Overproduction of astaxanthin from intermediates IPP and DMAPP via the carotenoid pathway. CrtEIB was from Pantoea ananatis ; crtYZ was from Pantoea agglomerans ; crtW was from Brevundimonas sp. SD212; idi was from E. coli ; and crtEs p1 , crtE sp2 , crtE sp3 , crtZ sp1 , and crtZ sp2 were from Sphingomonas sp. ATCC 55669. Gene expression was controlled by the P T7 promoter. ( C ) Production of astaxanthin in engineered strains from A1 to A6 detected by HPLC.

Article Snippet: Sphingomonas sp. ATCC 55669 with pBBR1MCS2 served as the negative control.

Techniques: Gene Expression

Strains and plasmids used in this study.

Journal: Biotechnology Journal

Article Title: Genome mining of astaxanthin biosynthetic genes from Sphingomonas sp. ATCC 55669 for heterologous overproduction in Escherichia coli

doi: 10.1002/biot.201400827

Figure Lengend Snippet: Strains and plasmids used in this study.

Article Snippet: Sphingomonas sp. ATCC 55669 with pBBR1MCS2 served as the negative control.

Techniques: Isolation, Plasmid Preparation, Chick Chorioallantoic Membrane Assay

Indicator Strain, and their Growth conditions

Journal: Molecular Biology Research Communications

Article Title: Genomic analysis of Enterococcus durans NT21, a putative bacteriocin-producing isolate

doi: 10.22099/mbrc.2022.44088.1760

Figure Lengend Snippet: Indicator Strain, and their Growth conditions

Article Snippet: Salmonella typhi , ATCC 55669 , BHI , 37 , +.

Techniques: Activity Assay